Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_24660Candidate ABC type Fe3+ transport system. (381 aa)    
Predicted Functional Partners:
Rta_34040
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
 
 
 0.985
Rta_15870
Candidate ABC type Fe3+ transport system, permease component with duplicated domains.
 
 
 0.968
Rta_34050
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily.
 
 
 0.957
Rta_15860
Candidate ABC type Fe3+ transport system, periplasmic component.
  
  
 0.918
afuC
Candidate ABC transporter, ATP-binding component probably involved in an Fe3+ transport system; Belongs to the ABC transporter superfamily.
 
 
 0.879
Rta_24270
Iron-regulated protein-like protein.
  
    0.818
exbD
Candidate biopolymer transport protein.
  
  
 0.656
exbD-4
Candidate biopolymer transport protein.
  
  
 0.656
Rta_28760
Candidate histidine kinase, classic.
   
   0.612
Rta_24670
Beta-keto-reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.602
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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