Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_24690tRNA processing ribonuclease BN-like protein. (259 aa)    
Predicted Functional Partners:
dnaG
Candidate DNA primase protein DnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.520
Rta_00450
Hypothetical protein.
 
     0.512
Rta_30280
Stress response protein csbD-like protein; Belongs to the UPF0337 (CsbD) family.
 
    0.442
Rta_15630
Candidate poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase).
  
     0.428
Rta_20540
PHA-depolymerases-like protein.
  
     0.419
Rta_07330
Hypothetical protein.
  
     0.418
Rta_21960
Conserved hypothetical protein.
  
     0.417
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
 
  
 0.401
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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