Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_24850Conserved hypothetical protein. (442 aa)    
Predicted Functional Partners:
Rta_24860
UDP- galactose 4-epimerase.
 
     0.942
glgC
Candidate glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
    0.859
rfbC-2
dTDP-L-rhamnose synthetase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
     0.857
Rta_24870
Hypothetical protein.
       0.773
Rta_37840
Candidate membrane protein.
  
     0.554
Rta_16690
Candidate membrane protein.
  
     0.501
Rta_24820
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.454
Rta_07690
Candidate beta-carotene ketolase (Beta-carotene oxygenase).
  
     0.436
Rta_01000
Candidate membrane protein.
  
     0.424
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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