Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_24890Conserved hypothetical protein. (299 aa)    
Predicted Functional Partners:
Rta_24880
Permease-like protein.
       0.777
Rta_24760
Candidate protocatechuate 4,5-dioxygenase beta chain.
 
     0.759
Rta_24770
Candidate protocatechuate 4,5-dioxygenase alpha chain.
 
     0.759
Rta_24780
Candidate 2-pyrone-4,6-dicarboxylate lactonase.
 
     0.749
Rta_24800
Candidate 4-oxalomesaconate hydratase.
 
     0.739
dctQ-8
Candidate large permease component.
       0.737
dctM-8
Candidate small permease component.
       0.737
Rta_24790
Candidate 4-Hydroxy-4-methyl-2-oxoglutarate aldolase.
 
     0.717
dctP-8
Candidate periplasmic component.
       0.716
Rta_24750
Candidate 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
     0.654
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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