Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dctM-8Candidate small permease component. (165 aa)    
Predicted Functional Partners:
dctP-8
Candidate periplasmic component.
 
  
 0.955
dctQ-8
Candidate large permease component.
 
 
 0.918
Rta_24880
Permease-like protein.
 
     0.831
dctP-7
Candidate periplasmic component.
 
  
 0.829
dctP
Candidate periplasmic component.
 
  
 0.780
Rta_24890
Conserved hypothetical protein.
       0.737
dctQ-7
Candidate large permease component.
 
 
 0.659
Rta_24930
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (Cobalamin-independent methionine synthase)-like protein.
       0.512
Rta_24940
Candidate histidine kinase, unorthodox.
       0.512
Rta_31340
Conserved hypothetical protein.
  
     0.450
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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