Rta_25000 protein (Ramlibacter tataouinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Rta_25000

Unsaturated acyl-CoA hydratase. (278 aa)

Predicted Functional Partners:

Rta_09110

0.945

Rta_25170

0.945

Rta_25010

0.942

ahcY

0.806

metH

0.803

Rta_14560

0.803

metH-2

0.800

metE

0.800

metZ

0.800

Rta_13050

0.800

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rta_09110	Rta_25000	Rta_09110	Rta_25000	Unsaturated acyl-CoA reductaseButyryl dehydrogenase.	Unsaturated acyl-CoA hydratase.	0.945
Rta_09110	Rta_25170	Rta_09110	Rta_25170	Unsaturated acyl-CoA reductaseButyryl dehydrogenase.	Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase).	0.908
Rta_13050	Rta_25000	Rta_13050	Rta_25000	3-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein.	Unsaturated acyl-CoA hydratase.	0.800
Rta_13050	metZ	Rta_13050	Rta_10700	3-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein.	Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase)-like protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.	0.835
Rta_14560	Rta_25000	Rta_14560	Rta_25000	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Unsaturated acyl-CoA hydratase.	0.803
Rta_14560	ahcY	Rta_14560	Rta_06910	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Candidate Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.913
Rta_14560	metE	Rta_14560	Rta_02490	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Candidate Methylcobalamin:homocysteine methyltransferase (Methionine synthase).	0.919
Rta_14560	metH	Rta_14560	Rta_01340	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Candidate Methionine synthase.	0.932
Rta_14560	metH-2	Rta_14560	Rta_01390	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Candidate methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.936
Rta_14560	metZ	Rta_14560	Rta_10700	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase)-like protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.	0.929
Rta_25000	Rta_09110	Rta_25000	Rta_09110	Unsaturated acyl-CoA hydratase.	Unsaturated acyl-CoA reductaseButyryl dehydrogenase.	0.945
Rta_25000	Rta_13050	Rta_25000	Rta_13050	Unsaturated acyl-CoA hydratase.	3-mercaptopyruvate sulfurtransferase (Rhodanese- like protein)-like protein.	0.800
Rta_25000	Rta_14560	Rta_25000	Rta_14560	Unsaturated acyl-CoA hydratase.	Candidate O-acetylhomoserine (Thiol)-lyase (O-acetylhomoserine sulfhydrylase); (Homocysteine synthase) (Methionine synthase).	0.803
Rta_25000	Rta_25010	Rta_25000	Rta_25010	Unsaturated acyl-CoA hydratase.	long-chain-fatty-acid--CoA ligase-like protein.	0.942
Rta_25000	Rta_25170	Rta_25000	Rta_25170	Unsaturated acyl-CoA hydratase.	Butyryl-CoA dehydrogenase (Short-chain-acyl-CoA dehydrogenase)-like protein; (Unsaturated acyl-CoA reductase) (Butyryl dehydrogenase).	0.945
Rta_25000	ahcY	Rta_25000	Rta_06910	Unsaturated acyl-CoA hydratase.	Candidate Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.806
Rta_25000	metE	Rta_25000	Rta_02490	Unsaturated acyl-CoA hydratase.	Candidate Methylcobalamin:homocysteine methyltransferase (Methionine synthase).	0.800
Rta_25000	metH	Rta_25000	Rta_01340	Unsaturated acyl-CoA hydratase.	Candidate Methionine synthase.	0.803
Rta_25000	metH-2	Rta_25000	Rta_01390	Unsaturated acyl-CoA hydratase.	Candidate methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.800
Rta_25000	metZ	Rta_25000	Rta_10700	Unsaturated acyl-CoA hydratase.	Cystathionine gamma-synthase (O-succinylhomoserine (Thiol)-lyase)-like protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.	0.800

page 1 of 3

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About