Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25050Conserved hypothetical protein. (397 aa)    
Predicted Functional Partners:
Rta_25040
Conserved hypothetical protein.
       0.749
Rta_17730
Gluconolactonase precursor-like protein.
 
   
 0.630
fkpA
Candidate Peptidylprolyl isomerase (Cyclophilin); (Peptidyl-prolyl cis-trans isomerase) (Rotamase).
       0.566
ilvD-2
Candidate dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.495
garD
Candidate D-galactarate dehydratase.
 
   
 0.456
Rta_25030
Transcriptional regulator, MarR family-like protein.
       0.449
Rta_33430
Candidate bifunctional protein : D-galactarate dehydratase; Altronate hydrolase (Altronic acid hydratase).
 
   
 0.447
tctC-48
Candidate extracytoplasmic binding receptor.
       0.424
Rta_11480
2-oxo-3-deoxygalactonate kinase.
 
     0.418
Rta_09030
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
     0.405
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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