Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_25200Candidate small-conductance mechanosensitive ion channel. (429 aa)    
Predicted Functional Partners:
Rta_25210
Histone deacetylase-like protein.
       0.835
Rta_26800
Candidate small conductance mechanosensitive ion.
 
  
 0.717
Rta_15000
Small-conductance mechanosensitive ion channel-like protein.
  
  
 0.675
Rta_25220
MoxR protein-like protein.
 
     0.628
Rta_25230
Conserved hypothetical protein.
       0.499
Rta_25240
Candidate membrane protein.
       0.498
Rta_31170
Conserved hypothetical protein.
 
     0.466
Rta_25190
Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit).
       0.464
Rta_25180
Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit).
       0.459
Rta_38170
Candidate membrane component of K+ transport systems, Kef type; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.450
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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