Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_25240Candidate membrane protein. (678 aa)    
Predicted Functional Partners:
Rta_25230
Conserved hypothetical protein.
  
 0.979
Rta_25220
MoxR protein-like protein.
 
   
 0.869
Rta_36920
Conserved hypothetical protein.
  
   
 0.754
pilN
Candidate Tfp pilus assembly protein PilN.
  
     0.745
pilO
Candidate Tfp pilus assembly protein PilO.
  
     0.742
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
  
     0.738
pilM
Candidate type IV pilus assembly protein.
 
     0.737
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
 
     0.722
pilQ
Candidate Fimbrial assembly protein pilQ precursor, secretin family.
  
     0.650
Rta_34500
Candidate histidine kinase, classic.
  
     0.649
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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