Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25370DNA internalization-related competence protein-like protein. (793 aa)    
Predicted Functional Partners:
Rta_33790
Conserved hypothetical protein.
 
  
 0.890
smf
Smf protein.
 
  
 0.883
pilD
Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.801
Rta_25360
Conserved hypothetical protein.
       0.696
Rta_25350
Conserved hypothetical protein.
       0.684
Rta_13580
Conserved hypothetical protein.
  
  
 0.675
Rta_25380
Conserved hypothetical protein.
       0.668
radC
Candidate DNA repair protein; Belongs to the UPF0758 family.
 
  
 0.665
holA
Candidate DNA polymerase III, delta subunit.
 
   
 0.663
gspF
Candidate general secretion pathway protein F.
  
  
 0.658
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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