Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25420Outer membrane protein-like protein. (609 aa)    
Predicted Functional Partners:
Rta_25430
Conserved hypothetical protein.
 
 
 0.995
cls
Candidate cardiolipin synthase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
 
     0.630
Rta_28650
HemY protein-like protein.
 
     0.610
Rta_21340
Conserved hypothetical protein.
   
    0.461
Rta_18960
Conserved hypothetical protein.
  
   
 0.441
Rta_07330
Hypothetical protein.
 
     0.435
kdsD
Candidate Arabinose 5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
    0.435
omp85
Candidate Outer membrane protein insertion machinery protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.429
Rta_17300
Conserved hypothetical protein.
  
     0.403
Rta_26670
Conserved hypothetical protein.
  
    0.401
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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