Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25430Conserved hypothetical protein. (1266 aa)    
Predicted Functional Partners:
Rta_25420
Outer membrane protein-like protein.
 
 
 0.995
Rta_28650
HemY protein-like protein.
 
     0.738
Rta_15340
Hypothetical protein.
  
    0.690
Rta_37670
ProP effector-like protein.
 
     0.601
Rta_37830
Candidate membrane protein.
  
     0.582
lptD
Organic solvent tolerance protein precursor-like protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.568
Rta_37460
Transcriptional regulator, MarR family-like protein.
  
     0.562
Rta_31210
Conserved hypothetical protein.
  
     0.551
Rta_00500
Conserved hypothetical protein.
 
     0.550
cls
Candidate cardiolipin synthase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
  
    0.549
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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