Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25500Conserved hypothetical protein. (861 aa)    
Predicted Functional Partners:
Rta_25510
Conserved hypothetical protein.
 
  
 0.973
Rta_25380
Conserved hypothetical protein.
 
  
 0.895
Rta_00660
Conserved hypothetical protein.
 
  
 0.876
Rta_25350
Conserved hypothetical protein.
 
   
0.775
Rta_26870
Proteasome alpha subunit (Multicatalytic endopeptidase complex alpha subunit)-like protein.
 
    0.775
Rta_25360
Conserved hypothetical protein.
 
   
0.751
Rta_30900
Conserved hypothetical protein.
 
     0.617
Rta_25490
Candidate histidine kinase, atypical hybrid.
       0.594
Rta_25470
Candidate histidine kinase, classic.
       0.568
Rta_25480
Candidate response regulator, CheY.
       0.568
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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