Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_25630Regulator protein (GGDEF domain), membrane protein-like protein. (381 aa)    
Predicted Functional Partners:
parC
Candidate DNA topoisomerase IV, subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
 
 0.787
Rta_33830
Candidate histidine kinase, unorthodox.
 
 
 0.697
Rta_19460
Candidate histidine kinase, atypical hybrid.
  
 
 0.693
parE
Candidate DNA topoisomerase IV, subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.656
Rta_24940
Candidate histidine kinase, unorthodox.
  
 
 0.649
Rta_25640
Spermidine N(1)-acetyltransferase (Diamine acetyltransferase)-like protein.
       0.648
Rta_04410
Candidate histidine kinase, hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.601
Rta_33020
Signal transduction protein : sensor, PAS/PAC domains; regulator, GGDEF/EAL domains-like protein.
 
 
 0.588
Rta_20070
Candidate histidine kinase, atypical unorthodox.
 
 
 0.566
Rta_33040
Signal transduction protein : sensor, GAF domain; regulator, GGDEF/EAL domains-like protein.
 
 
 0.551
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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