Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25720Conserved hypothetical protein. (257 aa)    
Predicted Functional Partners:
Rta_25710
Conserved hypothetical protein.
       0.692
dapA-2
Candidate dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.601
Rta_22430
Candidate ATP-binding component of an ABC transport system.
  
  
 0.568
Rta_10540
Candidate histidine kinase, hybrid.
  
  
 0.524
Rta_16560
Candidate histidine kinase, hybrid.
  
  
 0.524
phnM
Candidate PhnM protein.
  
  
 0.507
Rta_35280
Ubiquinone biosynthesis protein COQ7-like protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
   
 0.437
Rta_25690
Conserved hypothetical protein.
  
    0.424
Rta_25680
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.412
gltB
Candidate Ferredoxin-dependent glutamate synthase.
     
 0.410
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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