Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_25740Conserved hypothetical protein. (375 aa)    
Predicted Functional Partners:
Rta_25730
Conserved hypothetical protein.
       0.805
rplP
Candidate 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.739
Rta_25750
Peptidylprolyl isomerase (Cyclophilin)-like protein; (Peptidyl-prolyl cis-trans isomerase) (Rotamase).
       0.652
Rta_26710
Conserved hypothetical protein; Belongs to the UPF0307 family.
  
     0.559
Rta_01880
Conserved hypothetical protein.
  
     0.491
Rta_25725
Candidate outer membrane protein.
       0.487
Rta_07430
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein.
  
   
 0.458
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.420
Rta_08060
Hypothetical protein.
  
     0.407
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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