Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_26120Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains. (845 aa)    
Predicted Functional Partners:
Rta_26090
Candidate ABC type antimicrobial peptide transport system, ATP-binding component.
 
 
 0.984
Rta_11070
Candidate ABC transporter, ATP-binding component.
  
 
 0.971
lolD
Candidate ABC transporter, ATP-binding component; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.971
Rta_26150
Conserved hypothetical protein.
     0.890
Rta_22800
Candidate membrane protein.
  
  
 0.719
Rta_22810
Conserved hypothetical protein.
  
  
 0.719
Rta_22820
Conserved hypothetical protein.
  
  
 0.719
Rta_27730
CyaD protein-like protein.
  
  
 0.719
Rta_37110
Periplasmic linker protein-like protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.718
hslR
Candidate heat shock protein, HSP15 family.
  
    0.692
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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