Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_26180Chitinase, Glycoside Hydrolase Family 18-like protein. (335 aa)    
Predicted Functional Partners:
Rta_30025
N-acetylglucosamine kinase-like protein.
  
   
 0.678
Rta_32120
Conserved hypothetical protein.
  
     0.661
Rta_29650
Conserved hypothetical protein.
      
 0.618
Rta_29730
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein.
      
 0.618
Rta_29970
Hypothetical protein.
      
 0.618
Rta_29974
Conserved hypothetical protein.
      
 0.618
Rta_32250
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
      
 0.618
Rta_17190
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
  
     0.493
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
   
  
 0.481
Rta_10990
Candidate b-glycanase; Contains two C-terminal CBM35 modules, Glycoside Hydrolase Family 8; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
  
   
 0.473
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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