Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_26500Aspartate aminotransferase (Transaminase A)-like protein. (434 aa)    
Predicted Functional Partners:
lrp-2
Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family.
       0.578
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
  
     0.561
Rta_26490
Candidate transporter.
       0.558
gspC
Candidate general secretion pathway protein C, component of type II secretion system.
  
     0.519
gltB
Candidate Ferredoxin-dependent glutamate synthase.
     
 0.498
gspJ
Candidate pseudopilin, general secretion pathway protein J precursor (PilD-dependent protein), component of type II secretion system.
  
    0.482
rpsO
Candidate 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
     
 0.417
Rta_37990
L-fuculose phosphate aldolase (L-fuculose-1-phosphate aldolase)-like protein.
 
  
 0.404
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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