Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rta_26490 | Rta_26500 | Rta_26490 | Rta_26500 | Candidate transporter. | Aspartate aminotransferase (Transaminase A)-like protein. | 0.558 |
Rta_26490 | lrp-2 | Rta_26490 | Rta_26510 | Candidate transporter. | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | 0.424 |
Rta_26500 | Rta_26490 | Rta_26500 | Rta_26490 | Aspartate aminotransferase (Transaminase A)-like protein. | Candidate transporter. | 0.558 |
Rta_26500 | gltB | Rta_26500 | Rta_08100 | Aspartate aminotransferase (Transaminase A)-like protein. | Candidate Ferredoxin-dependent glutamate synthase. | 0.512 |
Rta_26500 | lrp-2 | Rta_26500 | Rta_26510 | Aspartate aminotransferase (Transaminase A)-like protein. | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | 0.580 |
gltB | Rta_26500 | Rta_08100 | Rta_26500 | Candidate Ferredoxin-dependent glutamate synthase. | Aspartate aminotransferase (Transaminase A)-like protein. | 0.512 |
gltB | lrp-2 | Rta_08100 | Rta_26510 | Candidate Ferredoxin-dependent glutamate synthase. | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | 0.447 |
gltB | putA | Rta_08100 | Rta_04440 | Candidate Ferredoxin-dependent glutamate synthase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.941 |
lrp-2 | Rta_26490 | Rta_26510 | Rta_26490 | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | Candidate transporter. | 0.424 |
lrp-2 | Rta_26500 | Rta_26510 | Rta_26500 | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | Aspartate aminotransferase (Transaminase A)-like protein. | 0.580 |
lrp-2 | gltB | Rta_26510 | Rta_08100 | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | Candidate Ferredoxin-dependent glutamate synthase. | 0.447 |
lrp-2 | putA | Rta_26510 | Rta_04440 | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.407 |
putA | gltB | Rta_04440 | Rta_08100 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Candidate Ferredoxin-dependent glutamate synthase. | 0.941 |
putA | lrp-2 | Rta_04440 | Rta_26510 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Candidate transcriptional regulator Lrp (Leucine-responsive regulatory protein), Lrp/AsnC family. | 0.407 |