Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_26560Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein. (201 aa)    
Predicted Functional Partners:
Rta_26570
Candidate ABC transporter probably involved in nitrate transport, periplasmic component.
 
  
 0.884
Rta_26600
Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.853
Rta_26620
Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein.
 
  
 0.833
Rta_26630
Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.823
gcp
Candidate O-sialoglycoprotein endopeptidase (Glycoprotease); Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.608
rpsA
Candidate 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.557
Rta_04410
Candidate histidine kinase, hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
     
 0.549
amtB
Candidate ammonia permease.
  
  
 0.528
Rta_26580
Candidate ABC transporter probably involved in nitrate transport, permease component.
 
   
 0.514
Rta_26590
Candidate ABC transporter probably involved in nitrate transport, ATP-binding component.
 
   
 0.480
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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