Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_26570Candidate ABC transporter probably involved in nitrate transport, periplasmic component. (428 aa)    
Predicted Functional Partners:
Rta_26590
Candidate ABC transporter probably involved in nitrate transport, ATP-binding component.
 0.997
Rta_26580
Candidate ABC transporter probably involved in nitrate transport, permease component.
 
 0.995
Rta_26630
Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.982
Rta_26560
Regulator protein (RNA-binding positive regulator), ANTAR domain-like protein.
 
  
 0.884
Rta_26600
Rubredoxin--NAD(+) reductase (Rubredoxin reductase)-like protein; (Rubredoxin-nicotinamide adenine dinucleotide reductase) (NADH-rubredoxin reductase); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.844
Rta_27240
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.
 
 0.842
Rta_27220
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.810
Rta_27210
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.802
Rta_32700
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.
 
 0.792
Rta_26620
Similar to assimilatory nitrite reductase [NAD(P)H] small subunit of Bacillus subtilis, which contains a ferredoxin domain-like protein.
 
  
 0.762
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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