Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_27010Conserved hypothetical protein. (170 aa)    
Predicted Functional Partners:
Rta_23860
Conserved hypothetical protein.
  
     0.773
Rta_27020
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.536
katE
Candidate hydroperoxidase II.
  
  
 0.449
katE-3
Candidate hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.449
Rta_10640
Conserved hypothetical protein.
   
  
 0.441
bfr
Candidate bacterioferritin; Iron-storage protein.
   
  
 0.432
Rta_33850
Conserved hypothetical protein.
 
    0.412
rsbR
Candidate signal transduction protein (modulator protein rsbR), STAS domain protein.
   
    0.406
rsbS
Candidate signal transduction protein (antagonist protein rsbS), STAS domain protein.
   
    0.406
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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