Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_27030Conserved hypothetical protein. (229 aa)    
Predicted Functional Partners:
Rta_27040
Candidate membrane protein.
 
     0.951
Rta_27050
Chemotaxis protein, motility protein-like protein.
 
     0.950
Rta_27060
Conserved hypothetical protein.
 
     0.911
Rta_36720
Esterase-like protein.
  
     0.575
Rta_33770
Conserved hypothetical protein.
  
     0.544
Rta_27020
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.524
Rta_18320
Candidate poly-beta-hydroxyalkanoate depolymerase.
  
     0.492
Rta_37860
Candidate guanyl-specific ribonuclease precursor (RNase).
  
     0.482
hc2x
Candidate histone H1 protein.
  
     0.467
Rta_37870
Conserved hypothetical protein.
  
     0.455
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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