Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_27200Bifunctional protein (MocR family) : transcriptional regulator, GntR family; aspartate transaminase-like protein. (488 aa)    
Predicted Functional Partners:
pncB
Candidate nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
       0.574
Rta_27210
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
     
 0.556
Rta_27220
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, permease component.
     
 0.556
Rta_27230
N-acyl-D-glutamate deacylase (N-acyl-D-glutamate amidohydrolase) and to D-aminoacylase (N-acyl-D-amino-acid deacylase)-like protein.
       0.519
Rta_27240
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, ATP-binding component.
       0.470
Rta_08390
Conserved hypothetical protein.
   
    0.409
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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