Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Rta_27280Polymyxin resistance protein pmrH; Belongs to the DegT/DnrJ/EryC1 family. (397 aa)    
Predicted Functional Partners:
hisD-2
Candidate histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
   
 0.857
rmlA1
dTDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.699
dcyD
Candidate D-cysteine desulfhydrase.
 
     0.699
Rta_27260
Candidate ABC type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
  
    0.685
Rta_27300
Gluconate 5-dehydrogenase (5-keto-D-gluconate 5- reductase)-like protein.
 
    0.675
Rta_27310
Threonine dehydrogenase and related Zn-dependent dehydrogenase-like protein.
 
    0.670
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
 
 
 0.670
Rta_29430
Hypothetical protein.
  
     0.658
Rta_27320
Candidate membrane protein.
       0.611
Rta_27330
Aspartate racemase-like protein.
       0.589
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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