Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_27490Potassium ion channel-like protein. (247 aa)    
Predicted Functional Partners:
trkG
Candidate membrane component of K+ transport systems; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
  
 
 0.818
moaE
(Molybdopterin synthase subunit 2) (Molybdenum cofactor biosynthesis protein E) (Molybdopterin converting factor large subunit).
   
    0.655
Rta_27500
Transcriptional regulator, AraC family-like protein.
       0.549
Rta_28670
Hydroxymethylbilane hydrolyase (cyclizing); Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.544
Rta_27530
Conserved hypothetical protein.
 
    0.540
Rta_03060
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Belongs to the glycosyl hydrolase 1 family.
  
     0.536
Rta_05050
Candidate b-glycosidase, Glycoside Hydrolase Family 1; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
     0.496
Rta_31720
tRNA and rRNA cytosine-C5-methylases-like protein.
  
    0.467
Rta_35660
16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
    0.467
Rta_27510
Conserved hypothetical protein.
       0.462
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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