Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_27510Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
Rta_19750
Transcriptional regulator, Neg_reg family-like protein.
  
    0.717
Rta_27500
Transcriptional regulator, AraC family-like protein.
 
     0.700
lysU
Candidate lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.628
Rta_27520
Hypothetical protein.
       0.563
Rta_23920
Conserved hypothetical protein.
  
     0.555
Rta_25520
Conserved hypothetical protein.
  
     0.542
Rta_02740
Candidate lysine efflux permease.
  
    0.535
Rta_27530
Conserved hypothetical protein.
       0.492
Rta_27490
Potassium ion channel-like protein.
       0.462
Rta_22180
Inorganic diphosphatase, membrane protein.
  
     0.439
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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