Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_27610Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
rpsI
Candidate 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.797
rpmA
Candidate 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.795
rpsU
Candidate 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.792
rpsF
Candidate 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.790
rpmH
Candidate 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.789
rpmE
50S ribosomal protein L31 type B; Belongs to the bacterial ribosomal protein bL31 family.
   
 
 0.787
rplY
50S ribosomal protein L25-like protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.787
rpsD
Candidate 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
   0.783
rpmB
Candidate 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.782
rpsE
Candidate 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.782
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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