Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_27730CyaD protein-like protein. (454 aa)    
Predicted Functional Partners:
Rta_27740
Candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains.
 
 
 0.995
Rta_27720
Conserved hypothetical protein.
 
  
 0.786
Rta_11010
Outer membrane protein-like protein.
 
 
 0.727
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
  
  
 0.719
Rta_13520
Candidate fused inner/outer membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.616
Rta_22830
Candidate outer membrane protein.
 
 
 0.566
Rta_27750
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
 
     0.560
Rta_16530
Outer membrane protein-like protein.
  
 
 0.537
Rta_35130
Candidate outer membrane transporter.
  
 
 0.537
Rta_37100
Candidate outer membrane channel.
  
 
 0.537
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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