Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_27740Candidate ABC type bacteriocin/lantibiotic exporters, ATP-binding and permease domains. (629 aa)    
Predicted Functional Partners:
Rta_27730
CyaD protein-like protein.
 
 
 0.995
Rta_27720
Conserved hypothetical protein.
 
  
 0.919
Rta_11010
Outer membrane protein-like protein.
  
  
 0.799
Rta_22800
Candidate membrane protein.
  
 
 0.664
Rta_22810
Conserved hypothetical protein.
  
 
 0.658
Rta_22820
Conserved hypothetical protein.
  
 
 0.658
msbA
Candidate ABC type multidrug transport system, ATP-binding and permease components; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.621
Rta_01360
Candidate ABC type multidrug transport system, ATP-binding and permease components.
 
 
 
0.610
Rta_13520
Candidate fused inner/outer membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
  
 0.601
Rta_02480
Conserved hypothetical protein.
  
  
 0.523
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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