STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_28010General stress protein-like protein. (165 aa)    
Predicted Functional Partners:
Rta_28950
Candidate histidine kinase, classic.
  
     0.619
Rta_30280
Stress response protein csbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
    0.596
Rta_30860
Conserved hypothetical protein.
  
    0.596
sbmA
Candidate SbmA protein.
       0.567
Rta_09250
Conserved hypothetical protein.
  
    0.537
Rta_06010
Conserved hypothetical protein.
  
    0.528
Rta_04300
Hypothetical protein.
  
     0.509
topB
Candidate type IB DNA topoisomerase.
 
     0.500
Rta_29570
Hypothetical protein.
  
    0.491
Rta_25470
Candidate histidine kinase, classic.
  
     0.488
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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