Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_28070Transcriptional regulator, GntR family-like protein. (255 aa)    
Predicted Functional Partners:
Rta_28090
Succinate dehydrogenase hydrophobic membrane anchor protein-like protein.
 
     0.741
Rta_28080
Succinate dehydrogenase cytochrome b-556 subunit-like protein.
 
     0.739
mdh
Candidate malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.655
sdhA
Candidate succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
    0.634
nagA
Candidate N-acetylglucosamine 6-phosphate deacetylase (NagA), Carbohydrate Esterase Family 9.
 
  
 0.585
Rta_28120
Conserved hypothetical protein.
       0.528
Rta_28050
(Citrate (pro-3S)-lyase beta chain) (Citryl-CoA lyase subunit); Belongs to the HpcH/HpaI aldolase family.
 
     0.490
Rta_24650
Candidate phasin (PHA granule-associated protein).
  
     0.480
sdhB-2
Candidate succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
   0.477
Rta_09020
Transcriptional regulator, GntR family-like protein.
  
  
 0.434
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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