Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_28120Conserved hypothetical protein. (87 aa)    
Predicted Functional Partners:
sdhA
Candidate succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.925
sdhB-2
Candidate succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.861
Rta_18430
Succinate dehydrogenase, flavoprotein subunit (Fumarate reductase)-like protein.
  
 0.787
Rta_35500
Fumarate reductase flavoprotein subunit precursor (Iron(III)-induced flavocytochrome C3)-like protein.
  
 0.787
Rta_28090
Succinate dehydrogenase hydrophobic membrane anchor protein-like protein.
 
     0.775
rpsG
Candidate 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.760
gltA
Candidate citrate synthase; Belongs to the citrate synthase family.
  
  
 0.756
Rta_28080
Succinate dehydrogenase cytochrome b-556 subunit-like protein.
 
  
 0.753
Rta_30650
Conserved hypothetical protein.
  
     0.747
Rta_00880
Conserved hypothetical protein.
    
   0.713
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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