Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_28140Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family. (313 aa)    
Predicted Functional Partners:
Rta_35490
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.752
Rta_01490
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.737
Rta_01910
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.715
leuC-4
Candidate 3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.675
cysB
Candidate transcriptional regulator CysB (Cys regulon transcriptional activator), LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.646
Rta_01100
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.638
Rta_07460
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.638
leuD-4
Candidate 3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.607
Rta_09350
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
  
     0.585
leuB
Candidate 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase); Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.545
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.