Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_28190Conserved hypothetical protein. (899 aa)    
Predicted Functional Partners:
truA
Candidate tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.905
pilO
Candidate Tfp pilus assembly protein PilO.
  
  
 0.779
pilN
Candidate Tfp pilus assembly protein PilN.
  
  
 0.775
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
  
  
 0.756
Rta_25230
Conserved hypothetical protein.
 
    0.756
Rta_36920
Conserved hypothetical protein.
  
   
 0.745
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
  
     0.733
pilI-2
Candidate twitching motility protein, chemotaxis protein cheW.
  
     0.733
trpA
Candidate tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.732
Rta_33230
Conserved hypothetical protein.
  
     0.731
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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