Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_28950Candidate histidine kinase, classic. (736 aa)    
Predicted Functional Partners:
Rta_25460
Candidate bacteriophytochrome heme oxygenase.
 
   
 0.757
Rta_28010
General stress protein-like protein.
  
     0.619
Rta_19460
Candidate histidine kinase, atypical hybrid.
   
 
 0.601
Rta_21140
Signal transduction protein: sensor, PAS/PAC domains-like protein.
 
 
 
 0.583
Rta_24940
Candidate histidine kinase, unorthodox.
 
 
 
 0.564
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
       0.543
Rta_21520
General stress protein-like protein.
  
     0.541
Rta_28970
Conserved hypothetical protein.
       0.540
Rta_28980
Conserved hypothetical protein; Belongs to the UPF0246 family.
       0.540
Rta_28990
Hypothetical protein.
       0.540
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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