Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilBCandidate type 4 fimbrial assembly protein pilB, putative traffic ATPase. (581 aa)    
Predicted Functional Partners:
pilC
Candidate type 4 fimbrial assembly protein pilC, gspF family.
 
 
 0.976
pilD
Candidate type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.957
gspF
Candidate general secretion pathway protein F.
 
 
 0.915
gspF-2
Candidate general secretion pathway protein F, component of type II secretion system.
 
 
 0.915
gspG-2
Candidate pseudopilin, general secretion pathway protein G precursor (PilD-dependent protein), component of type II secretion system.
 
 
 0.833
gspG
Candidate pseudopilin, general secretion pathway protein G precursor.
 
 
 0.832
pilM
Candidate type IV pilus assembly protein.
 
 
 
 0.710
coaE
Candidate dephospho-CoA kinase (Dephosphocoenzyme A kinase); Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.685
gspL
Candidate general secretion pathway protein L, component of type II secretion system.
  
 
 0.654
Rta_27720
Conserved hypothetical protein.
     
 0.639
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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