Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_29670Candidate translocation protein in type III secretion. (86 aa)    
Predicted Functional Partners:
Rta_29680
Candidate translocation protein in type III secretion, membrane protein.
 
 
 0.998
Rta_29710
Candidate type III secretory apparatus protein PcrD, membrane protein.
 
 
 0.992
Rta_29800
Translocation protein-like protein.
 
 
 0.992
Rta_29850
Conserved hypothetical protein.
 
 
 0.989
Rta_29720
Candidate translocation protein in type III secretion, membrane protein.
 
 
 
 0.958
Rta_29690
Translocation protein in type III secretion-like protein.
  
  
 0.949
Rta_29930
Type III secretion outer membrane protein PscC-like protein.
 
 
 0.914
Rta_29820
Flagellar biosynthesis/type III secretory pathway ATPase-like protein.
 
  
 0.897
Rta_29830
Conserved hypothetical protein.
 
  
 0.873
gspD-2
Candidate secretin, general secretion pathway protein D, component of type II secretion system.
  
 
 0.859
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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