Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_29780Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein. (253 aa)    
Predicted Functional Partners:
Rta_29790
Transcriptional regulator, AraC family-like protein.
       0.773
Rta_29800
Translocation protein-like protein.
 
  
 0.669
Rta_29820
Flagellar biosynthesis/type III secretory pathway ATPase-like protein.
 
  
 0.641
Rta_29770
Hypothetical protein.
       0.506
pilJ
Candidate twitching motility protein, methyl-accepting chemotaxis protein.
  
    0.438
Rta_29850
Conserved hypothetical protein.
 
    0.428
Rta_17970
Conserved hypothetical protein.
  
     0.420
Rta_29680
Candidate translocation protein in type III secretion, membrane protein.
 
  
 0.417
Rta_29720
Candidate translocation protein in type III secretion, membrane protein.
 
  
 0.417
Rta_19330
Candidate histidine kinase, CheA.
 
    0.415
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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