Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_29820Flagellar biosynthesis/type III secretory pathway ATPase-like protein. (439 aa)    
Predicted Functional Partners:
Rta_29830
Conserved hypothetical protein.
 
 
 0.994
Rta_04410
Candidate histidine kinase, hybrid; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.977
Rta_29720
Candidate translocation protein in type III secretion, membrane protein.
 
 
 0.974
Rta_29800
Translocation protein-like protein.
 
  
 0.974
Rta_29850
Conserved hypothetical protein.
 
  
 0.957
Rta_19330
Candidate histidine kinase, CheA.
 
  
 0.955
Rta_29690
Translocation protein in type III secretion-like protein.
  
 
 0.951
Rta_29710
Candidate type III secretory apparatus protein PcrD, membrane protein.
 
  
 0.934
Rta_34130
Candidate histidine kinase, CheA.
 
  
 0.910
Rta_29680
Candidate translocation protein in type III secretion, membrane protein.
 
  
 0.903
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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