Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_29980Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily. (347 aa)    
Predicted Functional Partners:
Rta_30000
Candidate ABC type sugar transport system, permease component.
 
 
 0.959
Rta_30010
Candidate ABC type sugar transport system, permease component.
 
 
 0.954
ugpE
Candidate ABC type sugar transport system, permease component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.943
Rta_31280
Candidate ABC type sugar transport system, permease component.
 
 
 0.934
Rta_30020
Candidate ABC type sugar transport system, periplasmic component.
 
 
 0.847
Rta_31270
Candidate ABC type sugar transport system, periplasmic component.
 
 
 0.815
Rta_29974
Conserved hypothetical protein.
  
  
 0.814
nagA
Candidate N-acetylglucosamine 6-phosphate deacetylase (NagA), Carbohydrate Esterase Family 9.
 
     0.811
Rta_29990
Conserved hypothetical protein.
 
   
 0.810
Rta_04510
Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.
 
 
 0.807
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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