Rta_30000 protein (Ramlibacter tataouinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Rta_30000

Candidate ABC type sugar transport system, permease component. (267 aa)

Predicted Functional Partners:

Rta_30020

0.996

Rta_30010

0.995

Rta_29980

0.959

Rta_31280

0.908

Rta_31300

0.908

Rta_29990

0.871

Rta_04510

0.820

Rta_31270

0.778

Rta_04520

0.765

Rta_04530

0.753

Your Current Organism:

Ramlibacter tataouinensis

NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Rta_04510	Rta_04520	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	0.997
Rta_04510	Rta_04530	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	0.997
Rta_04510	Rta_29980	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.	0.807
Rta_04510	Rta_30000	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Candidate ABC type sugar transport system, permease component.	0.820
Rta_04510	Rta_30020	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Candidate ABC type sugar transport system, periplasmic component.	0.727
Rta_04510	Rta_31270	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Candidate ABC type sugar transport system, periplasmic component.	0.727
Rta_04510	Rta_31300	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.	0.811
Rta_04520	Rta_04510	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	0.997
Rta_04520	Rta_04530	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	0.971
Rta_04520	Rta_29980	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.	0.610
Rta_04520	Rta_30000	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, permease component.	0.765
Rta_04520	Rta_30010	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, permease component.	0.784
Rta_04520	Rta_30020	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, periplasmic component.	0.695
Rta_04520	Rta_31270	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, periplasmic component.	0.695
Rta_04520	Rta_31280	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, permease component.	0.802
Rta_04520	Rta_31300	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.	0.602
Rta_04530	Rta_04510	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Glycerol transport system permease protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, permease component.	0.997
Rta_04530	Rta_04520	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	0.971
Rta_04530	Rta_29980	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, ATP-binding component; Belongs to the ABC transporter superfamily.	0.615
Rta_04530	Rta_30000	Glycerol transport system ATP-binding protein; Candidate ABC transporter probably involved in sn-glycerol-3-phosphate transport, ATP-binding component; Belongs to the ABC transporter superfamily.	Candidate ABC type sugar transport system, permease component.	0.753

page 1 of 5

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About