Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_30070Hypothetical protein. (262 aa)    
Predicted Functional Partners:
Rta_30050
Hypothetical protein.
 
 
 0.924
Rta_30060
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     0.881
Rta_35120
Candidate inner membrane transporter.
 
 
 0.854
Rta_13520
Candidate fused inner/outer membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.845
Rta_35130
Candidate outer membrane transporter.
 
 
 0.837
Rta_37100
Candidate outer membrane channel.
 
 
 0.823
Rta_16530
Outer membrane protein-like protein.
 
 
 0.783
Rta_16500
Candidate periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.679
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
  
 
 0.676
Rta_16520
Candidate inner membrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.518
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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