Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_30160Candidate ABC type multidrug transport system, ATP-binding component. (234 aa)    
Predicted Functional Partners:
Rta_30140
Permease component of an ABC transporteur-like protein.
 
 
 0.977
Rta_30150
Permease component of an ABC transporteur-like protein.
 
 
 0.975
Rta_31580
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
     
0.880
Rta_30130
Outer membrane protein precursor, TonB-dependent receptor-like protein.
 
     0.744
Rta_20080
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
    
0.687
Rta_31590
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
    
0.574
Rta_36530
Hypothetical protein.
  
     0.536
Rta_30170
Hypothetical protein.
       0.523
Rta_08190
Candidate ABC transporter, multidrug export system, permease component.
  
  
 0.520
Rta_01360
Candidate ABC type multidrug transport system, ATP-binding and permease components.
 
0.507
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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