Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_30180Transcriptional regulator, Fur family-like protein; Belongs to the Fur family. (162 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.638
Rta_30190
Hypothetical protein.
  
  
 0.629
Rta_28420
Conserved hypothetical protein.
  
    0.592
Rta_30170
Hypothetical protein.
       0.568
Rta_28470
Sigma-E factor negative regulatory protein-like protein.
  
     0.550
Rta_30640
Conserved hypothetical protein.
 
     0.508
Rta_17190
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
  
     0.502
Rta_30140
Permease component of an ABC transporteur-like protein.
 
   
 0.498
Rta_30150
Permease component of an ABC transporteur-like protein.
 
   
 0.493
Rta_06360
Conserved hypothetical protein.
  
  
 0.489
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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