Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_30280Stress response protein csbD-like protein; Belongs to the UPF0337 (CsbD) family. (70 aa)    
Predicted Functional Partners:
Rta_10790
Polysaccharide export protein-like protein.
  
    0.592
Rta_16210
Conserved hypothetical protein.
 
    0.580
Rta_04790
Periplasmic protein-like protein.
 
    0.571
Rta_30890
Conserved hypothetical protein.
 
    0.567
Rta_19350
AAA-metalloprotease-like protein.
  
     0.530
Rta_26120
Candidate ABC type transport system, involved in lipoprotein release, permease component with duplicated domains.
 
     0.515
Rta_29080
Hypothetical protein.
  
     0.513
ohr
Candidate organic hydroperoxide resistance protein.
  
  
 0.512
serS
Candidate seryl-tRNA synthetase (Serine--tRNA ligase); Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.505
Rta_36330
Hypothetical protein.
  
    0.499
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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