Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_30320Peptidylprolyl isomerase (Cyclophilin)-like protein; (Peptidyl-prolyl cis-trans isomerase) (Rotamase). (159 aa)    
Predicted Functional Partners:
ispH
Candidate 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
  
 0.923
Rta_30290
Candidate membrane protein.
       0.773
Rta_30300
Threonine dehydratase biosynthetic (Threonine deaminase)-like protein.
       0.773
Rta_30335
Conserved hypothetical protein.
 
     0.711
radC
Candidate DNA repair protein; Belongs to the UPF0758 family.
       0.681
Rta_25750
Peptidylprolyl isomerase (Cyclophilin)-like protein; (Peptidyl-prolyl cis-trans isomerase) (Rotamase).
  
   
 0.595
Rta_37680
Peptidylprolyl isomerase (Cyclophilin)-like protein; (Peptidyl-prolyl cis-trans isomerase) (Rotamase).
  
   
 0.556
ureG
Candidate urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
    
 
 0.532
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
  
 0.491
rpsJ
Candidate 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
  
 0.484
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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