Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_30410Polyketide synthase-like protein. (2108 aa)    
Predicted Functional Partners:
Rta_30430
Phosphopantetheinyl transferases-like protein.
 
 0.989
Rta_04860
acyl-CoA ligase (acyl-CoA synthetase)-like protein.
 0.988
fabD
Candidate [Acyl-carrier-protein] S-malonyltransferase.
  
 0.985
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
 
0.983
Rta_30600
Formate dehydrogenase beta subunit; NADH:ubiquinone oxidoreductase subunit 2 or 24 kDa subunit and subunit 1 or 51 kDa subunit fusion, chain E and chain F fusion-like protein.
  
 0.978
Rta_14540
Cytochromes P450-like protein.
 
 0.965
Rta_11790
long-chain-fatty-acid--CoA ligase-like protein.
 
 0.958
Rta_16200
long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase)-like protein.
 
 0.958
fabB
Candidate 3-oxoacyl-[acyl-carrier-protein] synthase I (Beta-ketoacyl-ACP synthase); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.953
fabF
Candidate 3-oxoacyl-[acyl-carrier-protein] synthase (Beta-ketoacyl-ACP synthase); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.953
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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