Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_30420MelG protein (non-ribosomal peptide synthetase)-like protein. (1519 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
 
0.983
Rta_30430
Phosphopantetheinyl transferases-like protein.
 
 
 0.948
Rta_04860
acyl-CoA ligase (acyl-CoA synthetase)-like protein.
  
0.920
Rta_04840
Polyketide synthase protein-like protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.877
Rta_14540
Cytochromes P450-like protein.
 
 
 0.810
nusB
Candidate N utilization substance protein B (Transcription termination factor); Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.777
Rta_04820
Conserved hypothetical protein.
 
  
 0.769
Rta_31720
tRNA and rRNA cytosine-C5-methylases-like protein.
  
  
 0.746
Rta_35660
16S rRNA m5C967 methyltransferase-like protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.746
hisI
Candidate Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
  
  
 0.734
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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